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Research Interests

Sommersemester 2013
- Seminar Algorithm Engineering
Wintersemester 2012/13
- Seminar Algorithm Engineering
Sommersemester 2012
- Seminar Algorithm Engineering mit Schwerpunkt Graph Data Mining
Sommersemester 2011
- PG 552: Drug Hunting - Navigation und visuelle Analyse im pharmakologischen Strukturraum
- Fachprojekt Algorithm Engineering
Wintersemester 2010/11
- PG 552: Drug Hunting - Navigation und visuelle Analyse im pharmakologischen Strukturraum
- Seminar Algorithm Engineering
Sommersemester 2010
- Seminar Graphenalgorithmen

Fabian Weißberg: Verfeinerung bitvektorbasierter Filterverfahren zur Substruktursuche in Molekülgraphdatenbanken, Bachelorarbeit, 2013
Henning Garus: Interactive Visualization of Molecular Scaffold Networks, Diplomarbeit, 2012
Patrick Baron: Integration ausgewählter Analyseverfahren für Affiliation-Netzwerke in Cytoscape, Bachelorarbeit, 2012
Till Schäfer: Beschleunigung hierarchischer Clusterverfahren für allgemeine metrische Distanzmaße, Diplomarbeit, 2012
Marianna D'Addario: Entwurf von Oligonukleotid-Bibliotheken für die DNA-Nanotechnologie, Diplomarbeit (Kooperation mit Prof. Rahmann und Prof. Niemeyer, Chemie), 2011

Scaffold Hunter - A tool for the analysis and exploration of chemical space
Planarization Approaches in Automatic Graph Drawing - DFG Priority Programme Algorithm Engineering (SPP 1307)

Scaffold Hunter: Facilitating Drug Discovery by Visual Analysis of Chemical Space
Karsten Klein, Nils Kriege, Petra Mutzel
in: G. Csurka, M. Kraus, R. Laramee, P. Richard, J. Braz (Eds.), Computer Vision, Imaging and Computer Graphics. Theory and Application; Communications in Computer and Information Science, 2013, 359, 176-192

MolMap - Visualizing Molecule Libraries as Topographic Maps
Martin Gronemann, Michael Jünger, Nils Kriege, Petra Mutzel
International Conference on Information Visualization Theory and Applications (IVAPP) 2013, 537-541, Best Paper Award.

Designing q-Unique DNA Sequences with Integer Linear Programs and Euler Tours in De Bruijn Graphs
Marianna D'Addario, Nils Kriege, Sven Rahmann
German Conference on Bioinformatics (GCB) 2012, Jena, Germany, 82-92.

Subgraph Matching Kernels for Attributed Graphs (arXiv.org, icml.cc)
Nils Kriege, Petra Mutzel
International Conference on Machine Learning (ICML) 2012.

Scaffold Hunter - Visual Analysis of Chemical Compound Databases
Karsten Klein, Nils Kriege, Petra Mutzel
International Conference on Information Visualization Theory and Applications (IVAPP) 2012, 626-635, Best Paper Award.

CT-Index: Fingerprint-based Graph Indexing Combining Cycles and Trees
Karsten Klein, Nils Kriege, Petra Mutzel
in: Proceedings of the 27th International Conference on Data Engineering (ICDE) 2011, Hannover, Germany, 1115-1126

Erweiterte Substruktursuche in Moleküldatenbanken und ihre Integration in Scaffold Hunter
Nils Kriege
in: TR10-1-001, Algorithm Engineering Report, Fakultät für Informatik, TU Dortmund, 2010.
Diploma Thesis, TU Dortmund, December 2009.

Scaffold Hunter - Interactive Exploration of Chemical Space
Karsten Klein, Nils Kriege, Petra Mutzel, Herbert Waldmann, Stefan Wetzel
in: D. Eppstein, E. Gansner (Eds.), 17th Symposium on Graph Drawing 2009, Chicago
Lecture Notes in Computer Science 5849, 2010, 426-427